Detailed information of SNP:
|
SNP ID:
sf0114115356(Gbrowse)
Chromosome: chr01 Position: 14115356 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 90.73% | 9.27% |
| All Indica | 783 | 87.23% | 12.77% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 199 | 95.98% | 4.02% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114115356 | A->G | INTERGENIC | None |