Detailed information of SNP:
|
SNP ID:
sf0114123521(Gbrowse)
Chromosome: chr01 Position: 14123521 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 51.07% | 48.93% |
| All Indica | 783 | 76.25% | 23.75% |
| All Japonica | 461 | 2.17% | 97.83% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 366 | 91.80% | 8.20% |
| Indica II | 212 | 43.40% | 56.60% |
| Indica Intermediate | 205 | 82.44% | 17.56% |
| Temperate Japonica | 309 | 0.32% | 99.68% |
| Tropical Japonica | 90 | 4.44% | 95.56% |
| Japonica Intermediate | 62 | 8.06% | 91.94% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114123521 | T->G | LOC_Os01g25040(LOC_Os01g25040.1) | Non-Synonymous SNP |