Detailed information of SNP:
|
SNP ID:
sf0114125030(Gbrowse)
Chromosome: chr01 Position: 14125030 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 83.35% | 16.65% |
| All Indica | 745 | 71.14% | 28.86% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 352 | 80.40% | 19.60% |
| Indica II | 198 | 48.99% | 51.01% |
| Indica Intermediate | 195 | 76.92% | 23.08% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114125030 | C->A | LOC_Os01g25040(LOC_Os01g25040.1) | Non-Synonymous SNP |