Detailed information of SNP:
|
SNP ID:
sf0114129072(Gbrowse)
Chromosome: chr01 Position: 14129072 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1337 | 80.18% | 19.82% |
| All Indica | 719 | 65.65% | 34.35% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 350 | 73.14% | 26.86% |
| Indica II | 181 | 45.86% | 54.14% |
| Indica Intermediate | 188 | 70.74% | 29.26% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114129072 | G->C | INTERGENIC | None |