Detailed information of SNP:
|
SNP ID:
sf0114133392(Gbrowse)
Chromosome: chr01 Position: 14133392 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 97.43% | 2.57% |
| All Indica | 785 | 96.82% | 3.18% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 206 | 96.12% | 3.88% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114133392 | A->G | LOC_Os01g25060(LOC_Os01g25060.1) | Non-Synonymous SNP |