Detailed information of SNP:
|
SNP ID:
sf0114134697(Gbrowse)
Chromosome: chr01 Position: 14134697 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 68.83% | 31.17% |
| All Indica | 796 | 53.77% | 46.23% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 36.10% | 63.90% |
| Indica II | 211 | 65.88% | 34.12% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114134697 | C->T | INTERGENIC | None |