Detailed information of SNP:
|
SNP ID:
sf0114136046(Gbrowse)
Chromosome: chr01 Position: 14136046 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 68.41% | 31.59% |
| All Indica | 792 | 52.27% | 47.73% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 371 | 37.20% | 62.80% |
| Indica II | 212 | 64.62% | 35.38% |
| Indica Intermediate | 209 | 66.51% | 33.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114136046 | T->C | INTERGENIC | None |