Detailed information of SNP:
|
SNP ID:
sf0114144787(Gbrowse)
Chromosome: chr01 Position: 14144787 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 71.61% | 28.39% |
| All Indica | 797 | 56.59% | 43.41% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 373 | 60.32% | 39.68% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114144787 | A->G | INTERGENIC | None |