Detailed information of SNP:
|
SNP ID:
sf0114144943(Gbrowse)
Chromosome: chr01 Position: 14144943 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 98.68% | 1.32% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 447 | 95.97% | 4.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 94.86% | 5.14% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114144943 | T->C | INTERGENIC | None |