Detailed information of SNP:
|
SNP ID:
sf0114146210(Gbrowse)
Chromosome: chr01 Position: 14146210 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 74.81% | 25.19% |
| All Indica | 798 | 61.90% | 38.10% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 62.93% | 37.07% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114146210 | T->C | INTERGENIC | None |