Detailed information of SNP:
|
SNP ID:
sf0114151288(Gbrowse)
Chromosome: chr01 Position: 14151288 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1257 | 56.09% | 43.91% |
| All Indica | 656 | 28.96% | 71.04% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 59 | 15.25% | 84.75% |
| Indica I | 292 | 18.15% | 81.85% |
| Indica II | 181 | 53.04% | 46.96% |
| Indica Intermediate | 183 | 22.40% | 77.60% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 33 | 75.76% | 24.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114151288 | A->G | INTERGENIC | None |