Detailed information of SNP:
|
SNP ID:
sf0114151349(Gbrowse)
Chromosome: chr01 Position: 14151349 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 58.95% | 41.05% |
| All Indica | 789 | 89.73% | 10.27% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 94.88% | 5.12% |
| Indica II | 208 | 75.96% | 24.04% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114151349 | T->C | INTERGENIC | None |