Detailed information of SNP:
|
SNP ID:
sf0114198929(Gbrowse)
Chromosome: chr01 Position: 14198929 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 84.60% | 15.40% |
| All Indica | 777 | 76.06% | 23.94% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 363 | 79.34% | 20.66% |
| Indica II | 205 | 62.93% | 37.07% |
| Indica Intermediate | 209 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114198929 | C->A | INTERGENIC | None |