Detailed information of SNP:
|
SNP ID:
sf0114200078(Gbrowse)
Chromosome: chr01 Position: 14200078 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 53.46% | 46.54% |
| All Indica | 787 | 28.84% | 71.16% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 63 | 25.40% | 74.60% |
| Indica I | 367 | 32.43% | 67.57% |
| Indica II | 209 | 38.76% | 61.24% |
| Indica Intermediate | 211 | 12.80% | 87.20% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114200078 | C->T | INTERGENIC | None |