Detailed information of SNP:
|
SNP ID:
sf0114207217(Gbrowse)
Chromosome: chr01 Position: 14207217 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 90.17% | 9.83% |
| All Indica | 762 | 86.48% | 13.52% |
| All Japonica | 491 | 96.74% | 3.26% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 358 | 89.94% | 10.06% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 192 | 86.46% | 13.54% |
| Temperate Japonica | 331 | 96.68% | 3.32% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114207217 | G->C | INTERGENIC | None |