Detailed information of SNP:
|
SNP ID:
sf0114208011(Gbrowse)
Chromosome: chr01 Position: 14208011 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 62.31% | 37.69% |
| All Indica | 750 | 41.33% | 58.67% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 59 | 38.98% | 61.02% |
| Indica I | 354 | 48.87% | 51.13% |
| Indica II | 199 | 46.73% | 53.27% |
| Indica Intermediate | 197 | 22.34% | 77.66% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114208011 | T->C | INTERGENIC | None |