Detailed information of SNP:
|
SNP ID:
sf0114208619(Gbrowse)
Chromosome: chr01 Position: 14208619 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 73.04% | 26.96% |
| All Indica | 797 | 58.34% | 41.66% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 62.13% | 37.87% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 209 | 32.54% | 67.46% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114208619 | G->C | INTERGENIC | None |