Detailed information of SNP:
|
SNP ID:
sf0114222141(Gbrowse)
Chromosome: chr01 Position: 14222141 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 75.99% | 24.01% |
| All Indica | 796 | 63.57% | 36.43% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 62.13% | 37.87% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 209 | 39.23% | 60.77% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114222141 | A->G | INTERGENIC | None |