Detailed information of SNP:
|
SNP ID:
sf0114222556(Gbrowse)
Chromosome: chr01 Position: 14222556 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 62.65% | 37.35% |
| All Indica | 792 | 96.46% | 3.54% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 371 | 96.50% | 3.50% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114222556 | A->G | INTERGENIC | None |