Detailed information of SNP:
|
SNP ID:
sf0114233891(Gbrowse)
Chromosome: chr01 Position: 14233891 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1205 | 84.81% | 15.19% |
| All Indica | 617 | 74.55% | 25.45% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 45 | 64.44% | 35.56% |
| Indica I | 298 | 73.49% | 26.51% |
| Indica II | 131 | 63.36% | 36.64% |
| Indica Intermediate | 188 | 84.04% | 15.96% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 33 | 81.82% | 18.18% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114233891 | C->T | INTERGENIC | None |