Detailed information of SNP:
|
SNP ID:
sf0114244796(Gbrowse)
Chromosome: chr01 Position: 14244796 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 66.59% | 33.41% |
| All Indica | 778 | 49.36% | 50.64% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 367 | 51.77% | 48.23% |
| Indica II | 207 | 68.12% | 31.88% |
| Indica Intermediate | 204 | 25.98% | 74.02% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114244796 | A->G | LOC_Os01g25210(LOC_Os01g25210.1) | Synonymous |