Detailed information of SNP:
|
SNP ID:
sf0114247531(Gbrowse)
Chromosome: chr01 Position: 14247531 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 62.47% | 37.53% |
| All Indica | 796 | 41.83% | 58.17% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 37.97% | 62.03% |
| Indica II | 211 | 25.59% | 74.41% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114247531 | A->T | INTERGENIC | None |