Detailed information of SNP:
|
SNP ID:
sf0114250368(Gbrowse)
Chromosome: chr01 Position: 14250368 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1288 | 70.42% | 29.58% |
| All Indica | 692 | 52.46% | 47.54% |
| All Japonica | 488 | 95.90% | 4.10% |
| Aus | 60 | 68.33% | 31.67% |
| Indica I | 332 | 54.82% | 45.18% |
| Indica II | 171 | 69.59% | 30.41% |
| Indica Intermediate | 189 | 32.80% | 67.20% |
| Temperate Japonica | 332 | 96.69% | 3.31% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 35 | 88.57% | 11.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114250368 | T->C | LOC_Os01g25230(LOC_Os01g25230.1) | INTRON |