Detailed information of SNP:
|
SNP ID:
sf0114252241(Gbrowse)
Chromosome: chr01 Position: 14252241 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 86.83% | 13.17% |
| All Indica | 779 | 78.82% | 21.18% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 367 | 78.47% | 21.53% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 202 | 64.36% | 35.64% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114252241 | T->A | LOC_Os01g25240(LOC_Os01g25240.1) | INTRON |