Detailed information of SNP:
|
SNP ID:
sf0114275351(Gbrowse)
Chromosome: chr01 Position: 14275351 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 72.44% | 27.56% |
| All Indica | 785 | 56.82% | 43.18% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 367 | 59.95% | 40.05% |
| Indica II | 209 | 72.25% | 27.75% |
| Indica Intermediate | 209 | 35.89% | 64.11% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114275351 | A->C | INTERGENIC | None |