Detailed information of SNP:
|
SNP ID:
sf0114277935(Gbrowse)
Chromosome: chr01 Position: 14277935 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 70.39% | 29.61% |
| All Indica | 795 | 53.84% | 46.16% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 57.10% | 42.90% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 210 | 33.81% | 66.19% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114277935 | A->T | INTERGENIC | None |