Detailed information of SNP:
|
SNP ID:
sf0114278249(Gbrowse)
Chromosome: chr01 Position: 14278249 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 70.55% | 29.45% |
| All Indica | 796 | 54.02% | 45.98% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 57.10% | 42.90% |
| Indica II | 212 | 68.40% | 31.60% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114278249 | G->C | INTERGENIC | None |