Detailed information of SNP:
|
SNP ID:
sf0114283749(Gbrowse)
Chromosome: chr01 Position: 14283749 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 52.28% | 47.72% |
| All Indica | 764 | 46.34% | 53.66% |
| All Japonica | 497 | 61.17% | 38.83% |
| Aus | 64 | 65.62% | 34.38% |
| Indica I | 354 | 50.56% | 49.44% |
| Indica II | 203 | 56.16% | 43.84% |
| Indica Intermediate | 207 | 29.47% | 70.53% |
| Temperate Japonica | 335 | 74.33% | 25.67% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114283749 | A->G | INTERGENIC | None |