Detailed information of SNP:
|
SNP ID:
sf0114288115(Gbrowse)
Chromosome: chr01 Position: 14288115 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 50.88% | 49.12% |
| All Indica | 795 | 78.87% | 21.13% |
| All Japonica | 496 | 3.23% | 96.77% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 374 | 78.61% | 21.39% |
| Indica II | 210 | 70.00% | 30.00% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114288115 | T->C | INTERGENIC | None |