Detailed information of SNP:
|
SNP ID:
sf0114288427(Gbrowse)
Chromosome: chr01 Position: 14288427 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 67.80% | 32.20% |
| All Indica | 764 | 49.35% | 50.65% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 65 | 58.46% | 41.54% |
| Indica I | 365 | 48.77% | 51.23% |
| Indica II | 191 | 70.16% | 29.84% |
| Indica Intermediate | 208 | 31.25% | 68.75% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114288427 | G->T | INTERGENIC | None |