Detailed information of SNP:
|
SNP ID:
sf0114290264(Gbrowse)
Chromosome: chr01 Position: 14290264 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1322 | 98.11% | 1.89% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 404 | 93.81% | 6.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 258 | 90.31% | 9.69% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114290264 | C->T | LOC_Os01g25300(LOC_Os01g25300.1) | UTR_3_PRIME |