Detailed information of SNP:



SNP ID: sf0114290264(Gbrowse)

Chromosome: chr01

Position: 14290264
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1322 98.11% 1.89%
All Indica798 100.00% 0.00%
All Japonica404 93.81% 6.19%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica258 90.31% 9.69%
Tropical Japonica82 100.00% 0.00%
Japonica Intermediate64 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate39 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0114290264 C->T LOC_Os01g25300(LOC_Os01g25300.1) UTR_3_PRIME