Detailed information of SNP:
|
SNP ID:
sf0114316935(Gbrowse)
Chromosome: chr01 Position: 14316935 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.99% | 10.01% |
| All Indica | 799 | 84.61% | 15.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114316935 | T->A | INTERGENIC | None |