Detailed information of SNP:
|
SNP ID:
sf0114352379(Gbrowse)
Chromosome: chr01 Position: 14352379 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 50.88% | 49.12% |
| All Indica | 799 | 84.48% | 15.52% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114352379 | T->C | LOC_Os01g25386(LOC_Os01g25386.1) | INTRON |