Detailed information of SNP:
|
SNP ID:
sf0114393775(Gbrowse)
Chromosome: chr01 Position: 14393775 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 81.11% | 18.89% |
| All Indica | 799 | 70.84% | 29.16% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 65.60% | 34.40% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114393775 | G->C | LOC_Os01g25440(LOC_Os01g25440.1) | INTRON |