Detailed information of SNP:
|
SNP ID:
sf0114482326(Gbrowse)
Chromosome: chr01 Position: 14482326 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 83.91% | 16.09% |
| All Indica | 797 | 77.42% | 22.58% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114482326 | A->G | INTERGENIC | None |