Detailed information of SNP:
|
SNP ID:
sf0114495667(Gbrowse)
Chromosome: chr01 Position: 14495667 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 95.64% | 4.36% |
| All Indica | 760 | 93.42% | 6.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 361 | 97.51% | 2.49% |
| Indica II | 197 | 88.32% | 11.68% |
| Indica Intermediate | 202 | 91.09% | 8.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114495667 | C->T | LOC_Os01g25580(LOC_Os01g25580.1) | Synonymous |