Detailed information of SNP:
|
SNP ID:
sf0114515678(Gbrowse)
Chromosome: chr01 Position: 14515678 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 88.72% | 11.28% |
| All Indica | 798 | 82.46% | 17.54% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114515678 | C->T | INTERGENIC | None |