Detailed information of SNP:
|
SNP ID:
sf0114518151(Gbrowse)
Chromosome: chr01 Position: 14518151 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.06% | 48.94% |
| All Indica | 798 | 25.44% | 74.56% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 210 | 37.62% | 62.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114518151 | A->G | INTERGENIC | None |