Detailed information of SNP:
|
SNP ID:
sf0114523278(Gbrowse)
Chromosome: chr01 Position: 14523278 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 85.19% | 14.81% |
| All Indica | 798 | 76.69% | 23.31% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114523278 | A->T | INTERGENIC | None |