Detailed information of SNP:
|
SNP ID:
sf0114523846(Gbrowse)
Chromosome: chr01 Position: 14523846 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.66% | 13.34% |
| All Indica | 797 | 78.92% | 21.08% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114523846 | C->A | INTERGENIC | None |