Detailed information of SNP:
|
SNP ID:
sf0114536703(Gbrowse)
Chromosome: chr01 Position: 14536703 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 52.62% | 47.38% |
| All Indica | 778 | 77.89% | 22.11% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 373 | 84.72% | 15.28% |
| Indica II | 203 | 59.11% | 40.89% |
| Indica Intermediate | 202 | 84.16% | 15.84% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114536703 | G->A | LOC_Os01g25650(LOC_Os01g25650.1) | Non-Synonymous SNP |