Detailed information of SNP:
|
SNP ID:
sf0114537300(Gbrowse)
Chromosome: chr01 Position: 14537300 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1293 | 87.55% | 12.45% |
| All Indica | 688 | 78.20% | 21.80% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 322 | 74.53% | 25.47% |
| Indica II | 180 | 82.78% | 17.22% |
| Indica Intermediate | 186 | 80.11% | 19.89% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114537300 | G->A | LOC_Os01g25650(LOC_Os01g25650.1) | INTRON |