Detailed information of SNP:
|
SNP ID:
sf0114562090(Gbrowse)
Chromosome: chr01 Position: 14562090 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 96.89% | 3.11% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114562090 | T->G | LOC_Os01g25688(LOC_Os01g25688.1) | INTRON |