Detailed information of SNP:
|
SNP ID:
sf0114562932(Gbrowse)
Chromosome: chr01 Position: 14562932 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 95.41% | 4.59% |
| All Indica | 779 | 92.81% | 7.19% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 369 | 90.79% | 9.21% |
| Indica II | 204 | 96.57% | 3.43% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114562932 | T->A | LOC_Os01g25688(LOC_Os01g25688.1) | INTRON |