Detailed information of SNP:
|
SNP ID:
sf0114582987(Gbrowse)
Chromosome: chr01 Position: 14582987 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 60.11% | 39.89% |
| All Indica | 797 | 93.35% | 6.65% |
| All Japonica | 496 | 3.02% | 96.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114582987 | T->C | INTERGENIC | None |