Detailed information of SNP:
|
SNP ID:
sf0114586128(Gbrowse)
Chromosome: chr01 Position: 14586128 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 60.76% | 39.24% |
| All Indica | 792 | 93.81% | 6.19% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114586128 | T->G | LOC_Os01g25740(LOC_Os01g25740.1) | UTR_3_PRIME |