Detailed information of SNP:
|
SNP ID:
sf0114592981(Gbrowse)
Chromosome: chr01 Position: 14592981 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 55.95% | 44.05% |
| All Indica | 759 | 86.56% | 13.44% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 348 | 81.90% | 18.10% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 204 | 87.75% | 12.25% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114592981 | C->A | INTERGENIC | None |