Detailed information of SNP:
|
SNP ID:
sf0114642686(Gbrowse)
Chromosome: chr01 Position: 14642686 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.34% | 42.66% |
| All Indica | 798 | 89.85% | 10.15% |
| All Japonica | 496 | 5.04% | 94.96% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114642686 | T->C | INTERGENIC | None |