Detailed information of SNP:
|
SNP ID:
sf0114705598(Gbrowse)
Chromosome: chr01 Position: 14705598 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 98.15% | 1.85% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 433 | 94.69% | 5.31% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 285 | 92.63% | 7.37% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114705598 | C->T | INTERGENIC | None |