Detailed information of SNP:
|
SNP ID:
sf0114793227(Gbrowse)
Chromosome: chr01 Position: 14793227 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.35% | 9.65% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 77.87% | 22.13% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114793227 | C->T | LOC_Os01g26120(LOC_Os01g26120.1) | INTRON |